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Creators/Authors contains: "Zhang, Shufan"

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  1. Free, publicly-accessible full text available May 22, 2026
  2. Abstract The presence of Arbuscular Mycorrhizal Fungi (AMF) in vascular land plant roots is one of the most ancient of symbioses supporting nitrogen and phosphorus exchange for photosynthetically derived carbon. Here we provide a multi-scale modeling approach to predict AMF colonization of a worldwide crop from a Recombinant Inbred Line (RIL) population derived fromSorghum bicolorandS. propinquum. The high-throughput phenotyping methods of fungal structures here rely on a Mask Region-based Convolutional Neural Network (Mask R-CNN) in computer vision for pixel-wise fungal structure segmentations and mixed linear models to explore the relations of AMF colonization, root niche, and fungal structure allocation. Models proposed capture over 95% of the variation in AMF colonization as a function of root niche and relative abundance of fungal structures in each plant. Arbuscule allocation is a significant predictor of AMF colonization among sibling plants. Arbuscules and extraradical hyphae implicated in nutrient exchange predict highest AMF colonization in the top root section. Our work demonstrates that deep learning can be used by the community for the high-throughput phenotyping of AMF in plant roots. Mixed linear modeling provides a framework for testing hypotheses about AMF colonization phenotypes as a function of root niche and fungal structure allocations. 
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  3. We study the problem of answering queries when (part of) the data may be sensitive and should not be leaked to the querier. Simply restricting the computation to non-sensitive part of the data may leak sensitive data through inference based on data dependencies. While inference control from data dependencies during query processing has been studied in the literature, existing solution either detect and deny queries causing leakage, or use a weak security model that only protects against exact reconstruction of the sensitive data. In this paper, we adopt a stronger security model based on full deniability that prevents any information about sensitive data to be inferred from query answers. We identify conditions under which full deniability can be achieved and develop an efficient algorithm that minimally hides non-sensitive cells during query processing to achieve full deniability. We experimentally show that our approach is practical and scales to increasing proportion of sensitive data, as well as, to increasing database size. 
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